PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72428.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YB
Protein Properties Length: 165aa    MW: 17843 Da    PI: 6.2661
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72428.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.25e-5817113197
         NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                   vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrktingddllwa+atlGfe+yv+plk+yl+kyr++eg++
  MLOC_72428.4  17 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYVDPLKIYLQKYRDMEGDS 113
                   69*********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5316120IPR009072Histone-fold
SuperFamilySSF471135.74E-4020120IPR009072Histone-fold
PfamPF008081.3E-282387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.4E-225169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.4E-227088No hitNo description
PRINTSPR006153.4E-2289107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MADDDSGSPR GGGGGGVREQ DRFLPIANIS RIMKKAVPAN GKIAKDAKET LQECVSEFIS  60
FVTSEASDKC QKEKRKTING DDLLWAMATL GFEEYVDPLK IYLQKYRDME GDSKLTSKSG  120
DGSVKKDIIG AHGGATSSNA QVMVQHGAYA QGMGYMQPQY HNGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4816108193NF-YB
4csr_A2e-4816108294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4awl_B2e-4816108294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766720.0AK376672.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3131D13.
GenBankJF7646010.0JF764601.1 Hordeum vulgare NF-YB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564550.11e-108PREDICTED: nuclear transcription factor Y subunit B-3
RefseqXP_010232523.11e-108PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotP252096e-93NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLF2EKJ51e-121F2EKJ5_HORVD; Predicted protein
TrEMBLH9N7V51e-121H9N7V5_HORVU; NF-YB2
STRINGMLOC_72428.41e-120(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-69nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Liang M,Hole D,Wu J,Blake T,Wu Y
    Expression and functional analysis of NUCLEAR FACTOR-Y, subunit B genes in barley.
    Planta, 2012. 235(4): p. 779-91
    [PMID:22042327]